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bigbio / py-pgatk

Python tools for proteogenomics analysis toolkit
Apache License 2.0
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Documentation improvement #16

Open ypriverol opened 5 years ago

ypriverol commented 5 years ago

@husensofteng probably will be good to add a table in the documentation for all the possible values of each parameter. I'm thinking for example about biotypes, translation table. This can help the users.

ypriverol commented 5 years ago

@enriquea can you create a couple of examples and add them to the docs. ?

husensofteng commented 5 years ago

updated the doc with more examples and explanations. also, added a section for the decoy generator. @enriquea It would be great if you could walk through it and improve it.

enriquea commented 5 years ago

updated the doc with more examples and explanations. also, added a section for the decoy generator. @enriquea It would be great if you could walk through it and improve it.

Hi, sure! will do today.

husensofteng commented 5 years ago

change all taxonomy_id to ensembl_name in the docs