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bigbio / py-pgatk

Python tools for proteogenomics analysis toolkit
Apache License 2.0
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Header of the proteins for search engines #18

Open ypriverol opened 5 years ago

ypriverol commented 5 years ago

@husensofteng the header of the proteins should be modified to be understood by SEARCH engines. SearchGUI don't understand the ENSEMBL ids. We probably need to move to the following header ( https://github.com/compomics/searchgui/wiki/DatabaseHelp#non-standard-fasta): 

>generic[your tag]|[protein accession]|[protein description]

or 

>generic[your tag]|[protein accession]

Note that [your tag] can be empty.

Examples:

>generic_contig-535081|AC:123132|Hypothetical protein
>generic|AC:123132|Hypothetical protein
>generic|AC:123132