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bigbio / py-pgatk

Python tools for proteogenomics analysis toolkit
Apache License 2.0
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replace --list_taxonomies with list_names #26

Closed husensofteng closed 2 years ago

husensofteng commented 4 years ago

since the tool takes ensemble (species) names as input for downloading, we should also change the listing option (--list_taxonomies) to list all species names instead of taxonomy ids.

ypriverol commented 2 years ago

@husensofteng should we close this issue. ?

husensofteng commented 2 years ago

yes, we close the issue since it already lists names and ids of all taxonomies.