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bigbio / py-pgatk

Python tools for proteogenomics analysis toolkit
Apache License 2.0
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DNA seq to ORFs: #4

Closed husensofteng closed 5 years ago

husensofteng commented 5 years ago

Extract ORFs from a given DNA sequence.

Input: string: DNA sequence int: number of ORFs from the forward side int: number of ORFs from the backward side int: translation table (1 for DNA or 2 for mitochondrial) file: genome fasta

Output: str: protein sequence for each extracted ORF str: new record ID