bigbio / py-pgatk

Python tools for proteogenomics analysis toolkit
Apache License 2.0
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change var_prefix #66

Closed husensofteng closed 2 years ago

husensofteng commented 2 years ago

Since not all proteins are from variants. It is better to assign a more generic name for the parameter such as protein_prefix instead of var_prefix.

https://github.com/bigbio/py-pgatk/blob/6d0b2b9a1f281c46f23696e69950a2220af02b86/pypgatk/commands/dnaseq_to_proteindb.py#L20