bigbio / py-pgatk

Python tools for proteogenomics analysis toolkit
Apache License 2.0
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Post-filter peptides #7

Closed husensofteng closed 3 years ago

husensofteng commented 5 years ago

Filter a list of peptides based on specified filters

Input: int: minimum length accepted peptide int: maximum length accepted peptide list: reference peptides to filter against (default null) list: variant peptides to keep if not found in reference peptides (default null, only used when variant peptides are generated).

Output: list: peptide sequences

husensofteng commented 3 years ago

The tasks has been addressed in the toolkit, the tool generates protein sequences