Closed ypriverol closed 7 months ago
Hi @ypriverol Can't I use the plot functions of MSstats in the MSstatsTMT script? even if they are inside the same container.
Are they? Is MSstats a dependency of MSstatsTMT? Does that work with conda as well? Please comment that part then.
Yes. MSstats is a dependency of MSstatsTMT https://www.bioconductor.org/packages/release/bioc/html/MSstatsTMT.html
MSstatsTMT used MSstats. https://rdrr.io/bioc/MSstatsTMT/src/R/proteinSummarization.functions.R
Now MSstats has not been imported, the source code of drawing is used directly. https://github.com/bigbio/quantms/pull/184/files#diff-c2f8ca314376fc9925b6c61cf03fdedffed5e5e66c01bd3f35b387387b98613a
Description of feature
In the PR #182 (see unresolved review comments) we found minor issues related with MSstats:
@qinchunyuan