Tests failing with new docker image from openms

bigbio / quantms

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

https://quantms.org

MIT License

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Tests failing with new docker image from openms #223

Closed ypriverol closed 10 months ago

ypriverol commented 2 years ago

Description of the bug

https://github.com/bigbio/quantms/pull/222

Command used and terminal output

No response

Relevant files

No response

System information

No response

jpfeuffer commented 2 years ago

Yes true. There is an indexing error after changing the handling of the experimental design in OpenMS.

But this only should affect the ProteomicsLFQ step. The rest is probably unrelated.