Comet new version has been released Comet v2024.01.0

bigbio / quantms

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

https://quantms.org

MIT License

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Comet new version has been released Comet v2024.01.0 #371

Open ypriverol opened 3 months ago

ypriverol commented 3 months ago

Description of feature

A new version of comet has been released Comet v2024.01.0 https://github.com/UWPR/Comet/releases. The new version includes some major changes, including the way to define the precursor tolerances and total number of modifications. We should do the following:

[ ] Generate the corresponding conda package @ypriverol
[ ] Update the OpenMS Adapter @ypriverol @timosachsenberg
[ ] Update quantms @daichengxin @ypriverol

timosachsenberg commented 3 months ago

What is the main motivation to make this high-priority? Quickly skimmed over the changelog and wasn't sure if it is "nice to have" or really needed now.

ypriverol commented 3 months ago

I will remove the priority. I did see that they fix a couple of bugs with the scores of some low-quality PSMs. But you are probably rigth, is not high priority.