In the identification workflow we are exporting parquet files with csv extension

bigbio / quantms

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

https://quantms.org

MIT License

34 stars 35 forks source link

In the identification workflow we are exporting parquet files with csv extension #408

Closed ypriverol closed 3 months ago

ypriverol commented 3 months ago

Description of the bug

Here:

https://github.com/bigbio/quantms/blob/8cf493bfb8f872554ed98993c9fc89fdf016ef2d/modules/local/extract_psm/main.nf#L26

we are exporting csv but internally quantmsutils is exporting to parquet.

Command used and terminal output

No response

Relevant files

No response

System information

No response