quantms error with sdrf latest versions

bigbio / quantms

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

https://quantms.org

MIT License

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quantms error with sdrf latest versions #66

Closed ypriverol closed 2 years ago

ypriverol commented 2 years ago

Description of feature

The recent version of sdrf-pipelines fails for the following SDRF in multiomics PXD008440.sdrf.tsv with an error empty columns values, which is not the case.

daichengxin commented 2 years ago

there are some nan values in PXD008440.sdrf.tsv.

jpfeuffer commented 2 years ago

@ypriverol is this solved?

ypriverol commented 2 years ago

I changed the nan -> non available 😂

timosachsenberg commented 2 years ago

is it solved?