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bigbio / quantms

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
https://quantms.org
MIT License
28 stars 35 forks source link

Add more elaborate experimental design validation #68

Open jpfeuffer opened 2 years ago

jpfeuffer commented 2 years ago

Description of feature

After parsing the SDRF, we should check if the OpenMS experimental design is also up to the OpenMS standard.

jpfeuffer commented 2 years ago

I did some additional checks in ProteomicsLFQ. I can check if they are present here and copy over.

jpfeuffer commented 2 years ago

Unfortunately the current way of using a create_meta_channel function is not compatible. Needs a complete re-write.