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bigdatagenomics
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adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Apache License 2.0
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Update Spark dependency version to 3.5.3
#2410
heuermh
closed
1 week ago
0
Update bdg-formats dependency version to 1.0.3, avro to 1.11.4
#2409
heuermh
closed
1 week ago
0
Bump org.apache.avro:avro from 1.11.3 to 1.11.4
#2408
dependabot[bot]
closed
1 week ago
2
Fix deploy snapshot Github Action failures
#2407
heuermh
opened
2 months ago
0
Update guava dependency version to 33.3.0-jre
#2406
heuermh
closed
2 months ago
0
Update Spark dependency version to 3.5.2
#2405
heuermh
closed
2 months ago
0
Update Spark dependency version to 3.5.2
#2404
heuermh
closed
2 months ago
1
[Adam - 2401] Refactoring Error Messages
#2403
joonkang-git
opened
2 months ago
3
Refactored MDTag.scala for consistency
#2402
joonkang-git
closed
2 months ago
0
Refactoring Error Logging Inconsistencies in MdTag.scala
#2401
joonkang-git
opened
2 months ago
0
Clean build
#2400
sih
closed
7 months ago
0
Update Spark dependency version to 3.5.0
#2399
heuermh
closed
9 months ago
0
Update Spark dependency version to 3.5.x
#2398
heuermh
closed
7 months ago
1
Remove duplicate release version 1.0.1 section from CHANGES.md
#2397
heuermh
closed
9 months ago
0
Duplicate 1.0.1 entry in CHANGES.md
#2396
heuermh
closed
9 months ago
0
Update maven-gpg-plugin dependency version to 3.1.0
#2395
heuermh
closed
10 months ago
0
Update bdg-formats dependency version to 1.0.2, bdg-utils to 1.0.1
#2394
heuermh
closed
10 months ago
0
Update spark dependency version to 3.3.4, and other dependency updates
#2393
heuermh
closed
10 months ago
0
Remove dependency on scala json package
#2392
heuermh
closed
10 months ago
0
Bump com.google.guava:guava from 31.1-jre to 32.0.0-jre
#2391
dependabot[bot]
closed
10 months ago
0
Bump org.apache.avro:avro from 1.11.1 to 1.11.3
#2390
dependabot[bot]
closed
10 months ago
0
Update dependency on commons-lang to commons-lang3
#2389
heuermh
closed
1 year ago
0
Bump org.apache.spark:spark-core_2.12 from 3.3.2 to 3.3.3
#2388
dependabot[bot]
closed
1 year ago
0
Parquet/Avro schema mismatch in transformFragments
#2387
heuermh
closed
10 months ago
1
Bump spark-core_2.12 from 3.3.2 to 3.4.0
#2386
dependabot[bot]
closed
1 year ago
1
Missing Fastq reads
#2385
SidWeng
opened
1 year ago
1
Update Spark dependency version to 3.3.2
#2384
heuermh
closed
1 year ago
0
Update Spark dependency version to 3.3.2
#2383
heuermh
closed
1 year ago
0
Parameter warnings for scala-maven-plugin
#2382
heuermh
closed
1 year ago
0
Bump htsjdk from 2.19.0 to 3.0.1
#2381
dependabot[bot]
closed
1 year ago
5
Update avro dependency version to 1.11.1
#2380
heuermh
closed
1 year ago
0
Update Avro dependency version to 1.11.1
#2379
heuermh
closed
1 year ago
0
Update dependency versions
#2378
heuermh
closed
1 year ago
0
Update Spark dependency version to 3.3.1
#2377
heuermh
closed
1 year ago
0
BAM/BED to parquet
#2376
darked89
closed
2 years ago
5
Update Spark dependency version to 3.3.0
#2375
heuermh
closed
2 years ago
1
Update python dev version to 1.1a0
#2374
heuermh
closed
2 years ago
0
Update bdg-formats dependency version to 1.0
#2373
heuermh
closed
2 years ago
0
Update bdg-utils dependency version to 1.0
#2372
heuermh
closed
2 years ago
0
Update bdg-formats dependency version to 1.0
#2371
heuermh
closed
2 years ago
0
Update bdg-utils dependency version to 1.0
#2370
heuermh
closed
2 years ago
0
[ADAM-2295] Add workaround for BAM files hosted on SRA s3 archive
#2369
heuermh
closed
2 years ago
0
Add count kmers methods to SequenceDataset
#2368
heuermh
closed
2 years ago
0
Add sort and maximum length arguments
#2367
heuermh
closed
2 years ago
0
[ADAM-2362] Account for duplicate kmers on left flank
#2366
heuermh
closed
2 years ago
0
Add maximum length parameter to countSliceKmers
#2365
heuermh
closed
2 years ago
0
Add references parameter to transformSequences/transformSequences/countKmers etc.
#2364
heuermh
closed
2 years ago
2
Add sort output parameter to countKmers/countSliceKmers
#2363
heuermh
closed
2 years ago
0
Kmers overcounted in Slice countKmers
#2362
heuermh
closed
2 years ago
0
Add single file argument to count kmers
#2361
heuermh
closed
2 years ago
0
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