search

bigdatagenomics / adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Apache License 2.0
1k stars 309 forks source link

Write block-gzipped (bgzf) feature formats #2191

Closed heuermh closed 4 years ago

heuermh commented 5 years ago

Not sure this will work. . . the header is written separately and not compressed

$ ./bin/adam-submit transformFeatures \
  -single \
  adam-core/src/test/resources/dvl1.200.gff3 \
  copy.gff3.gz

$ less copy.gff3.gz
##gff-version 3.2.1
^_<8B>^H^D^@^@^@^@^@<...
heuermh commented 4 years ago

Closing as WontFix