Indel realigner tries to realign areas with no consensus

bigdatagenomics / adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

Apache License 2.0

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Indel realigner tries to realign areas with no consensus #424

Closed fnothaft closed 9 years ago

fnothaft commented 10 years ago

The indel realigner will attempt to realign areas of the genome which haven't been attached to a target, which can cause errors where we try to reconstruct a reference with an (expected) gap.

fnothaft commented 9 years ago

Closed by #427.