search

bigdatagenomics / avocado

A Variant Caller, Distributed. Apache 2 licensed.
http://bdgenomics.org/projects/avocado/
Apache License 2.0
71 stars 42 forks source link

[AVOCADO-254] Open PrefilterReads up for external use. #256

Closed fnothaft closed 7 years ago

fnothaft commented 7 years ago

Resolves #254. Also drops the need to specify whether contig names follow GRCh or UCSC conventions.

coveralls commented 7 years ago

Coverage Status

Coverage increased (+0.9%) to 81.958% when pulling e3f4a3d39ff2a85367748e02c6fd0c0a0aefc971 on fnothaft:issues/254-open-prefilter-reads into 7d0011d68bf3f12c1c0a75c7d7423696053e2f7a on bigdatagenomics:master.

AmplabJenkins commented 7 years ago

Test PASSed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/avocado-prb/201/ Test PASSed.

coveralls commented 7 years ago

Coverage Status

Coverage increased (+0.07%) to 81.958% when pulling f08835a05774ee2b18cb62e09e34099f441fa33b on fnothaft:issues/254-open-prefilter-reads into 064be3ecf994996c08111addf1a0c5809f74ad18 on bigdatagenomics:master.

coveralls commented 7 years ago

Coverage Status

Coverage increased (+0.07%) to 81.958% when pulling f08835a05774ee2b18cb62e09e34099f441fa33b on fnothaft:issues/254-open-prefilter-reads into 064be3ecf994996c08111addf1a0c5809f74ad18 on bigdatagenomics:master.

AmplabJenkins commented 7 years ago

Test PASSed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/avocado-prb/202/ Test PASSed.