Support banded reference model

bigdatagenomics / avocado

A Variant Caller, Distributed. Apache 2 licensed.

http://bdgenomics.org/projects/avocado/

Apache License 2.0

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Support banded reference model #276

Open fnothaft opened 6 years ago

fnothaft commented 6 years ago

Currently, Avocado supports writing out gVCF style output at base pair resolution. This consumes approximately 30-50GB per sample for high coverage WGS. We should support exporting a banded file, which will compress down.