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bigdatagenomics / avocado

A Variant Caller, Distributed. Apache 2 licensed.
http://bdgenomics.org/projects/avocado/
Apache License 2.0
71 stars 42 forks source link

[AVOCADO-293] Use Spark SQL to filter variants prior to squaring off. #294

Closed fnothaft closed 6 years ago

fnothaft commented 6 years ago

Resolves #293.

coveralls commented 6 years ago

Coverage Status

Coverage decreased (-0.08%) to 79.929% when pulling 68cf2374ac79f4f709e59edb9c05a3cb161de8c5 on fnothaft:issues/293-spark-sql-variants-jg into 78f71e1e188f354190a9bf84189954ee6c829339 on bigdatagenomics:master.

coveralls commented 6 years ago

Coverage Status

Coverage decreased (-0.08%) to 79.929% when pulling 68cf2374ac79f4f709e59edb9c05a3cb161de8c5 on fnothaft:issues/293-spark-sql-variants-jg into 78f71e1e188f354190a9bf84189954ee6c829339 on bigdatagenomics:master.

AmplabJenkins commented 6 years ago

Test PASSed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/avocado-prb/230/ Test PASSed.