[AVOCADO-295] Set correct index when checking quality score during variant discovery.

bigdatagenomics / avocado

A Variant Caller, Distributed. Apache 2 licensed.

http://bdgenomics.org/projects/avocado/

Apache License 2.0

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[AVOCADO-295] Set correct index when checking quality score during variant discovery. #296

Open fnothaft opened 6 years ago

fnothaft commented 6 years ago

Resolves #295. @jpdna I'll test this and let you know if this winds up being much of an accuracy change. Thanks for catching this! Also, this needs some more tests to catch the bad behavior.

coveralls commented 6 years ago

Coverage remained the same at 79.929% when pulling c0ab9ff0d09a7f5303e0804e9fc666dd49a51636 on fnothaft:issues/295-fix-qual-index into e0979dd11a2fd0fd8714cd062b9e7ee835a265e5 on bigdatagenomics:master.

AmplabJenkins commented 6 years ago

Test PASSed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/avocado-prb/231/ Test PASSed.