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bigdatagenomics / avocado

A Variant Caller, Distributed. Apache 2 licensed.
http://bdgenomics.org/projects/avocado/
Apache License 2.0
71 stars 42 forks source link

[AVOCADO] Update ADAM dependency to 0.26.0. #307

Open heuermh opened 5 years ago

heuermh commented 5 years ago

Fixes #306 #225

AmplabJenkins commented 5 years ago

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/avocado-prb/237/

Build result: FAILURE

GitHub pull request #307 of commit 9694465fd61467cc0b4bf518563a091e14be2404 automatically merged.[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-staging-worker-02 (ubuntu staging-02 staging) in workspace /home/jenkins/workspace/avocado-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/avocado.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/avocado.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/avocado.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/307/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 463dfedc7f7a836505ab7825e885dd972aec2fb3 # timeout=10Checking out Revision 463dfedc7f7a836505ab7825e885dd972aec2fb3 (origin/pr/307/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 463dfedc7f7a836505ab7825e885dd972aec2fb3First time build. Skipping changelog.Triggering avocado-prb » 2.6.0,2.10,2.0.0,ubuntuTriggering avocado-prb » 2.3.0,2.10,2.0.0,ubuntuTriggering avocado-prb » 2.3.0,2.11,2.0.0,ubuntuTriggering avocado-prb » 2.6.0,2.11,2.0.0,ubuntuavocado-prb » 2.6.0,2.10,2.0.0,ubuntu completed with result FAILUREavocado-prb » 2.3.0,2.10,2.0.0,ubuntu completed with result FAILUREavocado-prb » 2.3.0,2.11,2.0.0,ubuntu completed with result FAILUREavocado-prb » 2.6.0,2.11,2.0.0,ubuntu completed with result FAILURE Test FAILed.

coveralls commented 5 years ago

Coverage Status

Coverage increased (+11.3%) to 91.115% when pulling 20adb9fab1a46e5c00d3a45a02bc50d9a79f40f0 on heuermh:adam-0.25.0 into 4cea7777bfa76a940ad875157b92f6de7cead980 on bigdatagenomics:master.

AmplabJenkins commented 5 years ago

Test PASSed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/avocado-prb/238/ Test PASSed.