Was working on a fix for https://github.com/bigdatagenomics/adam/issues/1381, and the long and short of things is that we should add a flag to note that a variant also has a non-ref (gVCF) model attached. This makes the fix to said issue much easier, and also makes this more explicit (right now, we imply it with a null alt allele).
heuermh
commented
7 years ago
Was working on a fix for https://github.com/bigdatagenomics/adam/issues/1381, and the long and short of things is that we should add a flag to note that a variant also has a non-ref (gVCF) model attached. This makes the fix to said issue much easier, and also makes this more explicit (right now, we imply it with a null alt allele).