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bigdatagenomics / bdg-formats

Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
Apache License 2.0
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[FORMATS-124] Add field for generic non-reference allele. #125

Closed fnothaft closed 7 years ago

fnothaft commented 7 years ago

Resolves #124. Adds a field to cover the case where a variant contains a symbolic non-reference alternate allele.

I'm not sure if I like this approach. Putting it out there to see if other people like it or don't like it.

AmplabJenkins commented 7 years ago

Test PASSed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/bdg-formats-prb/148/ Test PASSed.

heuermh commented 7 years ago

https://github.com/bigdatagenomics/adam/pull/1389 made this unnecessary, closing as WontFix