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bigdatagenomics / bdg-formats

Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
Apache License 2.0
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[FORMATS-138] Rename NucleotideContigFragment start/end fields. #139

Closed fnothaft closed 7 years ago

fnothaft commented 7 years ago

Resolves #138. Makes NucleotideContigFragment start and end fields consistent with all other record types that map to a single genomic range.

AmplabJenkins commented 7 years ago

Test PASSed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/bdg-formats-prb/160/ Test PASSed.

heuermh commented 7 years ago

If we go this way, I would also want to change fragmentSequence → sequence fragmentNumber → index fragmentLength → length numberOfFragmentsInContig → fragments

fnothaft commented 7 years ago

If we go this way, I would also want to change

Done!

AmplabJenkins commented 7 years ago

Test PASSed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/bdg-formats-prb/161/ Test PASSed.

heuermh commented 7 years ago

Thank you, @fnothaft