bigdatagenomics gnocchi issues

bigdatagenomics / gnocchi

Apache License 2.0

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issues

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Cluster performance optimizations

#41 nathanielparke closed 7 years ago
0
Adding code of contact adapted from the Contributor Convenant, version 1.4.

#40 heuermh opened 7 years ago
4
Updates from cluster

#39 nathanielparke closed 7 years ago
0
Gnocchi refactor

#38 nathanielparke closed 2 years ago
63
Namespace change: 'net.fnothaft' -> 'org.bdgenomics'

#37 nathanielparke closed 7 years ago
0
Logistic site regression rewrite

#36 nathanielparke closed 7 years ago
2
Regress Phenotypes refactor

#35 nathanielparke closed 7 years ago
0
Build and load models

#34 nathanielparke closed 7 years ago
0
Add failsafe plugin for integration testing

#33 massie closed 7 years ago
4
Gnocchi Cleanup resolves part of #25

#32 tkdagdelen closed 7 years ago
2
add validation stringency tag to Gnocchi for loggin singular matrix exceptions

#31 tkdagdelen opened 7 years ago
0
make gnocchi-test great again

#30 tkdagdelen opened 7 years ago
0
Generating new vcf test files with real rsIDs

#29 kunalgosar closed 6 years ago
0
Adding annotations to Associations from ClinVar

#28 adgirish opened 7 years ago
2
Update ADAM and Spark versions

#27 tkdagdelen opened 7 years ago
0
review tests and add rigor to testing suites where necessary

#26 tkdagdelen opened 7 years ago
0
Gnocchi cleanup

#25 tkdagdelen opened 7 years ago
0
Release Gnocchi Version 0.1.0

#24 tkdagdelen opened 7 years ago
0
LoadGenotypes does not detect existing ADAM Parquet files

#23 p-yang opened 7 years ago
0
Fix genotype filters for missingness, MAF, and genotyping rate

#22 nathanielparke closed 2 years ago
0
Move to avro objects instead of classes

#21 akmorrow13 opened 7 years ago
0
Removed unused files

#20 akmorrow13 closed 7 years ago
7
Give warning message when user is running logistic regression on non-categorical data

#19 nathanielparke closed 2 years ago
0
Instrumentation for RegressPhenotypes

#18 nathanielparke closed 7 years ago
4
Write filtered phenotypes to a file flag

#17 nathanielparke closed 7 years ago
3
MAF filter default between plink and gnocchi equal

#16 nathanielparke closed 7 years ago
1
Write tests for Save/Load model functionality

#15 tkdagdelen closed 7 years ago
0
Match Plink's Data Cleaning

#14 nathanielparke closed 7 years ago
2
User Thresholding

#13 nathanielparke closed 7 years ago
3
Adding CI scripts

#12 fnothaft closed 7 years ago
34
Cleaning up parquet file generation in cli tests

#11 tkdagdelen closed 7 years ago
0
Get CI set up

#10 fnothaft closed 7 years ago
0
Edit summary for README.

#9 heuermh closed 7 years ago
1
Uncomment/Remove large blocks of code

#8 akmorrow13 closed 7 years ago
1
Use org.bdgenomics for package names and groupId

#7 heuermh opened 7 years ago
0
Add LICENSE_header.txt and update source file headers

#6 heuermh closed 7 years ago
1
Repository cleanup

#5 heuermh closed 7 years ago
2
Fixing file tracking and permissions on executables

#4 devin-petersohn closed 7 years ago
2
git tracking some test files

#3 devin-petersohn closed 7 years ago
0
permissions on bin executables not set to execute

#2 devin-petersohn closed 7 years ago
0
Make a Readme

#1 tkdagdelen closed 7 years ago
1