bigomics omicsplayground issues

bigomics / omicsplayground

Visual self-service analytics platform for big omics data.

http://www.bigomics.ch

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issues

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autodetect of metabolomics probetype; remove probetype selectinput

#1135 ivokwee opened 7 hours ago
0
fix: check dimensions of table

#1134 ESCRI11 closed 14 hours ago
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Fix #1132: Genesets > Test geneset 'x' must be an array of at least two dimensions

#1133 ESCRI11 closed 15 hours ago
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BETA: Genesets > Test geneset 'x' must be an array of at least two dimensions

#1132 ESCRI11 closed 15 hours ago
0
BETA: Dataview > Sample info Error in apply: dim(X) must have a positive length

#1131 ESCRI11 closed 19 hours ago
0
fix umap not appearing if counts has zeros (solution adding prior)

#1130 ivokwee closed 19 hours ago
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Multiple wizards

#1129 ESCRI11 closed 1 day ago
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Add manual ComBat/limma & restructure server code

#1128 ivokwee closed 1 day ago
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Fix #1124: pairiwse comparisons are now displayed instead of phenotypes

#1127 ESCRI11 closed 1 day ago
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Fix #1121: Re-analyse Button leads to a frozen screen

#1126 ESCRI11 closed 1 day ago
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BETA: Uniprot Ids not being correctly translated into MGI Ids for mice

#1125 AxelBigOmics opened 2 days ago
0
BETA: Under "Cluster Features" pairiwse comparisons are now displayed instead of phenotypes (v3.5.0-rc2+general-labeltype240927)

#1124 AxelBigOmics closed 1 day ago
0
Fix #1118: Subset selection does not work in feature UMAP (genes)

#1123 ESCRI11 closed 1 day ago
1
Refactor PCSF board

#1122 ivokwee closed 5 days ago
1
BETA: Re-analyse Button leads to a frozen screen (Omics Playground v3.5.0-rc2+master240923)

#1121 AxelBigOmics closed 1 day ago
0
Refactor and simplify labeltype code

#1120 mauromiguelm closed 2 days ago
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fix selection of points when duplicated symbols; clean table

#1119 ivokwee closed 5 days ago
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Subset selection does not work in feature UMAP (genes)

#1118 ivokwee closed 1 day ago
0
Taxonomy assignment data transformation

#1117 TamarKopadze closed 6 days ago
1
fix: check uni-node graph

#1116 ESCRI11 closed 6 days ago
0
Fix #1109: Unable to delete message should be changed

#1115 ESCRI11 closed 6 days ago
0
fix: compare for multiple selection on samples filter

#1114 ESCRI11 closed 6 days ago
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Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent for Taxonomy data

#1113 TamarKopadze closed 1 week ago
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fix: remove duplicated argument

#1112 ESCRI11 closed 6 days ago
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feat: avoid logging repeating errors

#1111 ESCRI11 closed 6 days ago
1
BETA: Uniprot IDs not always converted into HGNC Ids for mouse

#1110 AxelBigOmics closed 1 week ago
1
Unable to delete message should be changed

#1109 ivokwee closed 6 days ago
0
Barplot of number of detected feature per sample

#1108 zitoa closed 6 days ago
0
Geninfo error

#1107 ESCRI11 closed 1 week ago
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Fix #1105: return to defaults if not pairwise

#1106 ESCRI11 closed 1 week ago
1
pairwise methods get stuck after removing 1vs1 comparisons

#1105 ESCRI11 closed 1 week ago
0
feat: grab tab/general settings

#1104 ESCRI11 closed 1 week ago
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test

#1103 ivokwee closed 1 week ago
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feat: no title on ggplot volcano plots

#1102 ESCRI11 closed 2 weeks ago
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feat: capture error message next to traceback

#1101 ESCRI11 closed 2 weeks ago
0
`playbase::merge_sparse_matrix` gives incorrect results

#1100 mauromiguelm closed 1 week ago
1
connectivity heatmap not working in zoom mode

#1099 ivokwee closed 2 weeks ago
1
fix: add i18n to dev boards

#1098 ESCRI11 closed 2 weeks ago
1
save connectivity results of USER sigdb to avoid recomputation

#1097 ivokwee closed 1 week ago
4
binarize continous phenotype variables

#1096 ivokwee closed 2 weeks ago
0
Use omics color palette

#1095 ESCRI11 closed 2 weeks ago
0
Update labeltype input selector when datasets is changed

#1094 mauromiguelm closed 3 weeks ago
0
Fix error in geneinfo module for features that do not have symbol

#1093 mauromiguelm closed 3 weeks ago
0
Fix #1083: Nodes in GO graph cannot be moved anymore

#1092 ESCRI11 closed 3 weeks ago
1
fix receive/sent tables not showing

#1091 ivokwee closed 3 weeks ago
0
feat: cog menu remove weird artifacts

#1090 ESCRI11 closed 3 weeks ago
0
feat: add autoclose to cog dropdown

#1089 ESCRI11 closed 3 weeks ago
0
Fix #1086: Language does not change if datatype is "LC/MS proteomics"

#1088 ESCRI11 closed 3 weeks ago
0
fix grey dots due to incomplete selection

#1087 ivokwee closed 3 weeks ago
1
Language does not change if datatype is "LC/MS proteomics"

#1086 ivokwee closed 3 weeks ago
0