Fix issue with `playbase::read_counts` not being able to read standard matrix

bigomics / playbase

Core back-end functionality and logic for OmicsPlayground

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Fix issue with `playbase::read_counts` not being able to read standard matrix #137

Closed mauromiguelm closed 3 weeks ago

mauromiguelm commented 4 weeks ago

The problem was caused by the fill=TRUE parameter, which failed for certain datasets due to unknown reason. This PR removes the fill=TRUE parameter to resolve the issue.

Optinally, we can fill the NAs, but since many clients do not want that, I left the autofill disable and the decision to fill or not NAs should be done at the upload module. [NEEDS REVIEW]

zitoa commented 4 weeks ago

It is also unclear whether the fill=TRUE introduces characters or numeric - thanks Mauro.