Fix Hub preview error: ModuleNotFoundError: No module named 'bioc'

bigscience-workshop / biomedical

Tools for curating biomedical training data for large-scale language modeling

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Closed albertvillanova closed 1 year ago

albertvillanova commented 1 year ago

Note that the library bioc is only used in bigbiohub.py to make a type hint annotation:

def get_texts_and_offsets_from_bioc_ann(ann: bioc.BioCAnnotation):

In this case, the error can be fixed by:

importing bioc only when used by static type checkers
making the annotation a forward reference (encoded as a string literal) to hide it from regular runtime

Fix #751.

albertvillanova commented 1 year ago

You can check the validity of the proposed solution by merging this PR in the Hugging Face Hub: