Closed drAbreu closed 8 months ago
Hi, @drAbreu Do you have link to the MeSH dictionary which use for this dataset? I have found in another repo but the bc5cdr has some mention ids which don't exist in the MeSH dictionary, I need to find the right version.
Solution I change the links of the data to this mirrored repository since the new domain of BioCreative seems to still have problems.
Checkbox
hub/hub_repos/my_dataset/my_dataset.py
(please use only lowercase and underscore for dataset naming)._CITATION
,_DATASETNAME
,_DESCRIPTION
,_HOMEPAGE
,_LICENSE
,_URLs
,_SUPPORTED_TASKS
,_SOURCE_VERSION
, and_BIGBIO_VERSION
variables._info()
,_split_generators()
and_generate_examples()
in dataloader script.BUILDER_CONFIGS
class attribute is a list with at least oneBigBioConfig
for the source schema and one for a bigbio schema.datasets.load_dataset
function.python -m tests.test_bigbio_hub <dataset_name> [--data_dir /path/to/local/data] --test_local
.