There is a dependency issue in the recently merged flambe dataset as it imports the bigbio schemas from the wrong file. I think this PR should fix that issue by importing the schemas using .bigbiohub instead of from bigbio.utils (a file that is in a different folder and which I think causes the ImportError).
Name:flambe
Description:a dataset aimed at procedural knowledge extraction from biomedical texts, particularly focusing on single cell research methodologies described in academic papers.
[x] Confirm that this PR is linked to the dataset issue.
[x] Create the dataloader script hub/hub_repos/my_dataset/my_dataset.py (please use only lowercase and underscore for dataset naming).
[x] Provide values for the _CITATION, _DATASETNAME, _DESCRIPTION, _HOMEPAGE, _LICENSE, _URLs, _SUPPORTED_TASKS, _SOURCE_VERSION, and _BIGBIO_VERSION variables.
[x] Implement _info(), _split_generators() and _generate_examples() in dataloader script.
[x] Make sure that the BUILDER_CONFIGS class attribute is a list with at least one BigBioConfig for the source schema and one for a bigbio schema.
[x] Confirm dataloader script works with datasets.load_dataset function.
[x] Confirm that your dataloader script passes the test suite run with python -m tests.test_bigbio_hub <dataset_name> [--data_dir /path/to/local/data] --test_local.
[x] If my dataset is local, I have provided an output of the unit-tests in the PR (please copy paste). This is OPTIONAL for public datasets, as we can test these without access to the data files.
closes #921
There is a dependency issue in the recently merged flambe dataset as it imports the bigbio schemas from the wrong file. I think this PR should fix that issue by importing the schemas using .bigbiohub instead of from bigbio.utils (a file that is in a different folder and which I think causes the ImportError).
Checkbox
hub/hub_repos/my_dataset/my_dataset.py(please use only lowercase and underscore for dataset naming)._CITATION,_DATASETNAME,_DESCRIPTION,_HOMEPAGE,_LICENSE,_URLs,_SUPPORTED_TASKS,_SOURCE_VERSION, and_BIGBIO_VERSIONvariables._info(),_split_generators()and_generate_examples()in dataloader script.BUILDER_CONFIGSclass attribute is a list with at least oneBigBioConfigfor the source schema and one for a bigbio schema.datasets.load_datasetfunction.python -m tests.test_bigbio_hub <dataset_name> [--data_dir /path/to/local/data] --test_local.