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bihealth / auto-acmg

Automatic classification of sequence variants and CNVs according to ACMG criteria.
GNU General Public License v3.0
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Unify auto-acmg methods #110

Closed gromdimon closed 3 months ago

gromdimon commented 3 months ago

Issue:

Description:

codecov[bot] commented 3 months ago

Codecov Report

Attention: Patch coverage is 49.10180% with 85 lines in your changes are missing coverage. Please review.

Project coverage is 76.69%. Comparing base (62630c7) to head (88cbba4).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #110 +/- ## ========================================== - Coverage 79.37% 76.69% -2.68% ========================================== Files 21 23 +2 Lines 1687 1802 +115 ========================================== + Hits 1339 1382 +43 - Misses 348 420 +72 ``` | [Files](https://app.codecov.io/gh/bihealth/auto-acmg/pull/110?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth) | Coverage Δ | | |---|---|---| | [src/defs/annonars\_variant.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/110?src=pr&el=tree&filepath=src%2Fdefs%2Fannonars_variant.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2RlZnMvYW5ub25hcnNfdmFyaWFudC5weQ==) | `100.00% <100.00%> (ø)` | | | [src/defs/auto\_acmg.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/110?src=pr&el=tree&filepath=src%2Fdefs%2Fauto_acmg.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2RlZnMvYXV0b19hY21nLnB5) | `98.75% <100.00%> (+0.83%)` | :arrow_up: | | [src/criteria/auto\_ps1\_pm5.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/110?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_ps1_pm5.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcHMxX3BtNS5weQ==) | `66.66% <66.66%> (ø)` | | | [src/auto\_acmg.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/110?src=pr&el=tree&filepath=src%2Fauto_acmg.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2F1dG9fYWNtZy5weQ==) | `88.15% <84.61%> (+17.68%)` | :arrow_up: | | [src/criteria/auto\_ba1\_bs1\_bs2\_pm2.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/110?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_ba1_bs1_bs2_pm2.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fYmExX2JzMV9iczJfcG0yLnB5) | `23.80% <0.00%> (ø)` | | | [src/criteria/auto\_pm4\_bp3.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/110?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_pm4_bp3.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcG00X2JwMy5weQ==) | `34.69% <34.69%> (ø)` | | | [src/criteria/auto\_criteria.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/110?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_criteria.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fY3JpdGVyaWEucHk=) | `26.98% <26.98%> (ø)` | |