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bihealth / auto-acmg

Automatic classification of sequence variants and CNVs according to ACMG criteria.
GNU General Public License v3.0
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Init pp3 and bp4 implementation #115

Closed gromdimon closed 3 months ago

gromdimon commented 3 months ago

Issue:

Description:

codecov[bot] commented 3 months ago

Codecov Report

Attention: Patch coverage is 32.89474% with 51 lines in your changes are missing coverage. Please review.

Project coverage is 69.44%. Comparing base (7910e6b) to head (a79ba80). Report is 1 commits behind head on main.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #115 +/- ## ========================================== - Coverage 70.75% 69.44% -1.31% ========================================== Files 27 28 +1 Lines 2055 2134 +79 ========================================== + Hits 1454 1482 +28 - Misses 601 652 +51 ``` | [Files](https://app.codecov.io/gh/bihealth/auto-acmg/pull/115?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth) | Coverage Δ | | |---|---|---| | [src/auto\_acmg.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/115?src=pr&el=tree&filepath=src%2Fauto_acmg.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2F1dG9fYWNtZy5weQ==) | `88.60% <ø> (+0.44%)` | :arrow_up: | | [src/defs/annonars\_variant.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/115?src=pr&el=tree&filepath=src%2Fdefs%2Fannonars_variant.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2RlZnMvYW5ub25hcnNfdmFyaWFudC5weQ==) | `100.00% <100.00%> (ø)` | | | [src/defs/auto\_acmg.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/115?src=pr&el=tree&filepath=src%2Fdefs%2Fauto_acmg.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2RlZnMvYXV0b19hY21nLnB5) | `98.94% <100.00%> (+0.04%)` | :arrow_up: | | [src/criteria/auto\_acmg.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/115?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_acmg.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fYWNtZy5weQ==) | `19.44% <9.09%> (-1.18%)` | :arrow_down: | | [src/criteria/auto\_pp3\_bp4.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/115?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_pp3_bp4.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcHAzX2JwNC5weQ==) | `31.66% <31.66%> (ø)` | |