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bihealth / auto-acmg

Automatic classification of sequence variants and CNVs according to ACMG criteria.
GNU General Public License v3.0
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Implement SpliceAI scores check and proximity to the splice site check for the `AutoBP7` #125

Closed gromdimon closed 3 months ago

gromdimon commented 3 months ago

Issue:

Description:

codecov[bot] commented 3 months ago

Codecov Report

Attention: Patch coverage is 16.27907% with 72 lines in your changes missing coverage. Please review.

Project coverage is 65.42%. Comparing base (e90ea8f) to head (4131eee).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #125 +/- ## ========================================== + Coverage 64.99% 65.42% +0.42% ========================================== Files 28 28 Lines 2417 2418 +1 ========================================== + Hits 1571 1582 +11 + Misses 846 836 -10 ``` | [Files](https://app.codecov.io/gh/bihealth/auto-acmg/pull/125?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth) | Coverage Δ | | |---|---|---| | [src/defs/annonars\_variant.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/125?src=pr&el=tree&filepath=src%2Fdefs%2Fannonars_variant.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2RlZnMvYW5ub25hcnNfdmFyaWFudC5weQ==) | `100.00% <100.00%> (ø)` | | | [src/criteria/auto\_bp7.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/125?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_bp7.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fYnA3LnB5) | `26.66% <13.63%> (-7.27%)` | :arrow_down: | | [src/utils.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/125?src=pr&el=tree&filepath=src%2Futils.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL3V0aWxzLnB5) | `41.63% <10.16%> (+5.20%)` | :arrow_up: |