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bihealth / auto-acmg

Automatic classification of sequence variants and CNVs according to ACMG criteria.
GNU General Public License v3.0
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Finish `AutoPP2BP1` #129

Closed gromdimon closed 2 months ago

gromdimon commented 3 months ago

Issue:

Description: N/A

codecov[bot] commented 3 months ago

Codecov Report

Attention: Patch coverage is 46.71533% with 73 lines in your changes missing coverage. Please review.

Project coverage is 60.29%. Comparing base (42eac56) to head (bd0183d).

:exclamation: Current head bd0183d differs from pull request most recent head c27948d

Please upload reports for the commit c27948d to get more accurate results.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #129 +/- ## ========================================== - Coverage 60.87% 60.29% -0.58% ========================================== Files 28 28 Lines 2538 2637 +99 ========================================== + Hits 1545 1590 +45 - Misses 993 1047 +54 ``` | [Files](https://app.codecov.io/gh/bihealth/auto-acmg/pull/129?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth) | Coverage Δ | | |---|---|---| | [src/criteria/auto\_ps1\_pm5.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/129?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_ps1_pm5.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcHMxX3BtNS5weQ==) | `58.75% <100.00%> (ø)` | | | [src/defs/annonars\_range.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/129?src=pr&el=tree&filepath=src%2Fdefs%2Fannonars_range.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2RlZnMvYW5ub25hcnNfcmFuZ2UucHk=) | `100.00% <100.00%> (ø)` | | | [src/defs/annonars\_variant.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/129?src=pr&el=tree&filepath=src%2Fdefs%2Fannonars_variant.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2RlZnMvYW5ub25hcnNfdmFyaWFudC5weQ==) | `100.00% <100.00%> (ø)` | | | [src/pvs1/seqvar\_pvs1.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/129?src=pr&el=tree&filepath=src%2Fpvs1%2Fseqvar_pvs1.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL3B2czEvc2VxdmFyX3B2czEucHk=) | `51.11% <ø> (ø)` | | | [src/criteria/auto\_bp7.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/129?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_bp7.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fYnA3LnB5) | `20.61% <0.00%> (-2.37%)` | :arrow_down: | | [src/criteria/auto\_pm1.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/129?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_pm1.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcG0xLnB5) | `20.77% <0.00%> (-2.08%)` | :arrow_down: | | [src/criteria/auto\_pp3\_bp4.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/129?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_pp3_bp4.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcHAzX2JwNC5weQ==) | `15.70% <0.00%> (-2.23%)` | :arrow_down: | | [src/criteria/auto\_pp2\_bp1.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/129?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_pp2_bp1.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcHAyX2JwMS5weQ==) | `17.64% <5.40%> (-3.19%)` | :arrow_down: |