search

bihealth / auto-acmg

Automatic classification of sequence variants and CNVs according to ACMG criteria.
GNU General Public License v3.0
4 stars 0 forks source link

Finish Autopm4bp3 #132

Closed gromdimon closed 2 months ago

gromdimon commented 2 months ago

Issue:

Description: N/A

codecov[bot] commented 2 months ago

Codecov Report

Attention: Patch coverage is 40.62500% with 95 lines in your changes missing coverage. Please review.

Project coverage is 62.52%. Comparing base (ae868a5) to head (ed2e579).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #132 +/- ## ========================================== - Coverage 63.31% 62.52% -0.79% ========================================== Files 28 29 +1 Lines 2622 2751 +129 ========================================== + Hits 1660 1720 +60 - Misses 962 1031 +69 ``` | [Files](https://app.codecov.io/gh/bihealth/auto-acmg/pull/132?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth) | Coverage Δ | | |---|---|---| | [src/criteria/auto\_bp7.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/132?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_bp7.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fYnA3LnB5) | `32.29% <ø> (ø)` | | | [src/criteria/auto\_ps1\_pm5.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/132?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_ps1_pm5.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcHMxX3BtNS5weQ==) | `55.68% <ø> (ø)` | | | [src/defs/annonars\_gene.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/132?src=pr&el=tree&filepath=src%2Fdefs%2Fannonars_gene.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2RlZnMvYW5ub25hcnNfZ2VuZS5weQ==) | `100.00% <100.00%> (ø)` | | | [src/defs/auto\_acmg.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/132?src=pr&el=tree&filepath=src%2Fdefs%2Fauto_acmg.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2RlZnMvYXV0b19hY21nLnB5) | `95.56% <100.00%> (+0.17%)` | :arrow_up: | | [src/core/config.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/132?src=pr&el=tree&filepath=src%2Fcore%2Fconfig.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NvcmUvY29uZmlnLnB5) | `96.77% <75.00%> (-3.23%)` | :arrow_down: | | [src/api/annonars.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/132?src=pr&el=tree&filepath=src%2Fapi%2Fannonars.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2FwaS9hbm5vbmFycy5weQ==) | `83.63% <78.57%> (-1.73%)` | :arrow_down: | | [src/criteria/auto\_pm4\_bp3.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/132?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_pm4_bp3.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcG00X2JwMy5weQ==) | `27.86% <14.81%> (-3.05%)` | :arrow_down: | | [src/criteria/auto\_ba1\_bs1\_bs2\_pm2.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/132?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_ba1_bs1_bs2_pm2.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fYmExX2JzMV9iczJfcG0yLnB5) | `15.15% <4.22%> (-10.21%)` | :arrow_down: |