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bihealth / auto-acmg

Automatic classification of sequence variants and CNVs according to ACMG criteria.
GNU General Public License v3.0
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Finish AutoPM1 #133

Closed gromdimon closed 2 months ago

gromdimon commented 2 months ago

Issue:

Description: N/A

codecov[bot] commented 2 months ago

Codecov Report

Attention: Patch coverage is 18.18182% with 27 lines in your changes missing coverage. Please review.

Project coverage is 62.14%. Comparing base (e7e01ff) to head (fb172a7).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #133 +/- ## ========================================== - Coverage 62.52% 62.14% -0.38% ========================================== Files 29 29 Lines 2751 2774 +23 ========================================== + Hits 1720 1724 +4 - Misses 1031 1050 +19 ``` | [Files](https://app.codecov.io/gh/bihealth/auto-acmg/pull/133?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth) | Coverage Δ | | |---|---|---| | [src/criteria/auto\_pm4\_bp3.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/133?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_pm4_bp3.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcG00X2JwMy5weQ==) | `27.86% <ø> (ø)` | | | [src/defs/auto\_acmg.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/133?src=pr&el=tree&filepath=src%2Fdefs%2Fauto_acmg.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2RlZnMvYXV0b19hY21nLnB5) | `95.56% <ø> (ø)` | | | [src/criteria/auto\_ba1\_bs1\_bs2\_pm2.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/133?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_ba1_bs1_bs2_pm2.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fYmExX2JzMV9iczJfcG0yLnB5) | `14.18% <13.33%> (-0.97%)` | :arrow_down: | | [src/criteria/auto\_pm1.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/133?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_pm1.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcG0xLnB5) | `20.00% <22.22%> (-1.06%)` | :arrow_down: | ... and [1 file with indirect coverage changes](https://app.codecov.io/gh/bihealth/auto-acmg/pull/133/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth)