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bihealth / auto-acmg

Automatic classification of sequence variants and CNVs according to ACMG criteria.
GNU General Public License v3.0
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Renme some methods #137

Closed gromdimon closed 2 months ago

gromdimon commented 2 months ago

N/A

codecov[bot] commented 2 months ago

Codecov Report

Attention: Patch coverage is 52.87356% with 41 lines in your changes missing coverage. Please review.

Project coverage is 62.14%. Comparing base (63fe972) to head (34ccd3a).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #137 +/- ## ======================================= Coverage 62.14% 62.14% ======================================= Files 29 29 Lines 2774 2774 ======================================= Hits 1724 1724 Misses 1050 1050 ``` | [Files](https://app.codecov.io/gh/bihealth/auto-acmg/pull/137?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth) | Coverage Δ | | |---|---|---| | [src/criteria/auto\_pp3\_bp4.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/137?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_pp3_bp4.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcHAzX2JwNC5weQ==) | `68.33% <100.00%> (ø)` | | | [src/criteria/auto\_ps1\_pm5.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/137?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_ps1_pm5.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcHMxX3BtNS5weQ==) | `55.68% <50.00%> (ø)` | | | [src/criteria/auto\_ba1\_bs1\_bs2\_pm2.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/137?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_ba1_bs1_bs2_pm2.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fYmExX2JzMV9iczJfcG0yLnB5) | `14.18% <50.00%> (ø)` | | | [src/criteria/auto\_pm1.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/137?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_pm1.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcG0xLnB5) | `20.00% <33.33%> (ø)` | | | [src/criteria/auto\_pp2\_bp1.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/137?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_pp2_bp1.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcHAyX2JwMS5weQ==) | `17.79% <50.00%> (ø)` | | | [src/criteria/auto\_bp7.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/137?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_bp7.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fYnA3LnB5) | `32.29% <50.00%> (ø)` | | | [src/pvs1/seqvar\_pvs1.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/137?src=pr&el=tree&filepath=src%2Fpvs1%2Fseqvar_pvs1.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL3B2czEvc2VxdmFyX3B2czEucHk=) | `51.11% <59.45%> (ø)` | | | [src/pvs1/strucvar\_pvs1.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/137?src=pr&el=tree&filepath=src%2Fpvs1%2Fstrucvar_pvs1.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL3B2czEvc3RydWN2YXJfcHZzMS5weQ==) | `33.00% <42.30%> (ø)` | |