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bihealth / auto-acmg

Automatic classification of sequence variants and CNVs according to ACMG criteria.
GNU General Public License v3.0
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Renaming: positive to met, negative to unmet #142

Closed gromdimon closed 2 months ago

gromdimon commented 2 months ago

Issue:

Description:

codecov[bot] commented 2 months ago

Codecov Report

Attention: Patch coverage is 50.00000% with 4 lines in your changes missing coverage. Please review.

Project coverage is 52.58%. Comparing base (83c47ce) to head (575484e).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #142 +/- ## ======================================= Coverage 52.58% 52.58% ======================================= Files 34 34 Lines 3282 3282 ======================================= Hits 1726 1726 Misses 1556 1556 ``` | [Files](https://app.codecov.io/gh/bihealth/auto-acmg/pull/142?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth) | Coverage Δ | | |---|---|---| | [src/auto\_acmg.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/142?src=pr&el=tree&filepath=src%2Fauto_acmg.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2F1dG9fYWNtZy5weQ==) | `84.44% <ø> (ø)` | | | [src/criteria/auto\_criteria.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/142?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_criteria.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fY3JpdGVyaWEucHk=) | `15.67% <ø> (ø)` | | | [src/defs/auto\_acmg.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/142?src=pr&el=tree&filepath=src%2Fdefs%2Fauto_acmg.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2RlZnMvYXV0b19hY21nLnB5) | `95.56% <100.00%> (ø)` | | | [src/bench/comparison.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/142?src=pr&el=tree&filepath=src%2Fbench%2Fcomparison.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2JlbmNoL2NvbXBhcmlzb24ucHk=) | `0.00% <0.00%> (ø)` | | | [src/bench/comparison\_v1.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/142?src=pr&el=tree&filepath=src%2Fbench%2Fcomparison_v1.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2JlbmNoL2NvbXBhcmlzb25fdjEucHk=) | `0.00% <0.00%> (ø)` | | | [src/bench/comparison\_v2.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/142?src=pr&el=tree&filepath=src%2Fbench%2Fcomparison_v2.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2JlbmNoL2NvbXBhcmlzb25fdjIucHk=) | `0.00% <0.00%> (ø)` | | | [src/bench/comparison\_v3.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/142?src=pr&el=tree&filepath=src%2Fbench%2Fcomparison_v3.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2JlbmNoL2NvbXBhcmlzb25fdjMucHk=) | `0.00% <0.00%> (ø)` | |