search

bihealth / auto-acmg

Automatic classification of sequence variants and CNVs according to ACMG criteria.
GNU General Public License v3.0
4 stars 0 forks source link

Add paginated annonarse range queries #149

Closed gromdimon closed 1 month ago

gromdimon commented 1 month ago

Issue:

Description: n/A

codecov[bot] commented 1 month ago

Codecov Report

Attention: Patch coverage is 40.00000% with 45 lines in your changes missing coverage. Please review.

Project coverage is 50.25%. Comparing base (90b574d) to head (57d27db).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #149 +/- ## ========================================== - Coverage 52.62% 50.25% -2.38% ========================================== Files 35 35 Lines 3373 3397 +24 ========================================== - Hits 1775 1707 -68 - Misses 1598 1690 +92 ``` | [Files](https://app.codecov.io/gh/bihealth/auto-acmg/pull/149?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth) | Coverage Δ | | |---|---|---| | [src/criteria/auto\_bp7.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/149?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_bp7.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fYnA3LnB5) | `32.29% <100.00%> (ø)` | | | [src/defs/annonars\_range.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/149?src=pr&el=tree&filepath=src%2Fdefs%2Fannonars_range.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2RlZnMvYW5ub25hcnNfcmFuZ2UucHk=) | `100.00% <100.00%> (ø)` | | | [src/pvs1/seqvar\_pvs1.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/149?src=pr&el=tree&filepath=src%2Fpvs1%2Fseqvar_pvs1.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL3B2czEvc2VxdmFyX3B2czEucHk=) | `51.11% <100.00%> (ø)` | | | [src/bench/comparison\_v0.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/149?src=pr&el=tree&filepath=src%2Fbench%2Fcomparison_v0.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2JlbmNoL2NvbXBhcmlzb25fdjAucHk=) | `0.00% <0.00%> (ø)` | | | [src/bench/comparison\_v1.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/149?src=pr&el=tree&filepath=src%2Fbench%2Fcomparison_v1.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2JlbmNoL2NvbXBhcmlzb25fdjEucHk=) | `0.00% <0.00%> (ø)` | | | [src/criteria/auto\_pm1.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/149?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_pm1.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcG0xLnB5) | `20.00% <0.00%> (ø)` | | | [src/criteria/auto\_pp2\_bp1.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/149?src=pr&el=tree&filepath=src%2Fcriteria%2Fauto_pp2_bp1.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2NyaXRlcmlhL2F1dG9fcHAyX2JwMS5weQ==) | `17.79% <0.00%> (ø)` | | | [src/bench/comparison\_v2.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/149?src=pr&el=tree&filepath=src%2Fbench%2Fcomparison_v2.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2JlbmNoL2NvbXBhcmlzb25fdjIucHk=) | `0.00% <0.00%> (ø)` | | | [src/api/dotty.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/149?src=pr&el=tree&filepath=src%2Fapi%2Fdotty.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2FwaS9kb3R0eS5weQ==) | `40.00% <28.57%> (-37.78%)` | :arrow_down: | | [src/bench/comparison\_v3.py](https://app.codecov.io/gh/bihealth/auto-acmg/pull/149?src=pr&el=tree&filepath=src%2Fbench%2Fcomparison_v3.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL2JlbmNoL2NvbXBhcmlzb25fdjMucHk=) | `0.00% <0.00%> (ø)` | | | ... and [2 more](https://app.codecov.io/gh/bihealth/auto-acmg/pull/149?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth) | | ... and [1 file with indirect coverage changes](https://app.codecov.io/gh/bihealth/auto-acmg/pull/149/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth)