Correct counting pathogenic variants in `_critical4protein_function` method

bihealth / auto-acmg

Automatic classification of sequence variants and CNVs according to ACMG criteria.

GNU General Public License v3.0

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Correct counting pathogenic variants in `_critical4protein_function` method #41

Closed gromdimon closed 6 months ago

gromdimon commented 6 months ago

Is your feature request related to a problem? Please describe. We have a TODO in _critical4protein_function method in src.seqvar_pvs1. We need to properly count the pathogenic variants.

Describe the solution you'd like

[ ] Research and implement counting only pathogenic variants.
[ ] Update tests
[ ] Update docstring as needed

Describe alternatives you've considered N/A

Additional context N/A

gromdimon commented 6 months ago

Should be implemented after #55

gromdimon commented 6 months ago

Was implemented with #55 and #63