Add integration testing

bihealth / auto-acmg

Automatic classification of sequence variants and CNVs according to ACMG criteria.

GNU General Public License v3.0

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Add integration testing #90

Closed gromdimon closed 6 months ago

gromdimon commented 6 months ago

Is your feature request related to a problem? Please describe. Currently we test the application logic only with unit tests. However, it is important to have integration tests, to ensure the correctness of the application as a whole service.

Describe the solution you'd like Add test for:

verify_PVS1 method of SeqVarPVS1 class
any other verify methods of different ACMG criteria

Describe alternatives you've considered N/A

Additional context N/A

gromdimon commented 6 months ago

Since this integration tests will use data from APIs it's essential to refine the list of variants used for development and testing. We should establish a 'golden standard' or benchmark by selecting a representative subset of variants that can serve as a reference point for future testing. This variants will indeed be used for testing.