bihealth / digestiflow-demux

:spaghetti: Digestiflow Demultiplexing Tool
MIT License
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Cleanup conda environments #35

Open messersc opened 2 years ago

messersc commented 2 years ago

Conda is slow. There is already an option to use mamba instead of conda for solving, but we should further investigate the following fixes:

Afterwards, evaluate and check if more work is needed here.

messersc commented 2 years ago

tagging @martenj

messersc commented 2 years ago

Alternatively, it looks like it is possible to have one conda environment with all necessary binaries in there and call it with --conda-prefix, cf. https://bioinformatics.stackexchange.com/a/6923