Open messersc opened 2 years ago
Conda is slow. There is already an option to use mamba instead of conda for solving, but we should further investigate the following fixes:
defaults
conda config --set channel_priority strict
Afterwards, evaluate and check if more work is needed here.
tagging @martenj
Alternatively, it looks like it is possible to have one conda environment with all necessary binaries in there and call it with --conda-prefix, cf. https://bioinformatics.stackexchange.com/a/6923
--conda-prefix
Conda is slow. There is already an option to use mamba instead of conda for solving, but we should further investigate the following fixes:
defaults
channel, as bioconda and conda-forge should be enough.conda config --set channel_priority strict
)Afterwards, evaluate and check if more work is needed here.