Feature/per sample bases mask

bihealth / digestiflow-demux

:spaghetti: Digestiflow Demultiplexing Tool

MIT License

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Closed messersc closed 5 years ago

messersc commented 5 years ago

Fix #4 and #8 for bcl2fastq2.

Split bcl2fastq and bcl2fastq2 rule into two rules
Enable bcl2fastq2 to demultiplex multiple bases masks in parallel with separate sample sheets
Enable bcl2fastq2 to demultiplex runs with index pools
Introduce marker file for snakemake to decide which rule (demux_tool) to run