Open january3 opened 2 years ago
Normally, one can change the default yaml file with the sea-snap configuration using the snakemake option --config file_name"..."
--config file_name"..."
This works correctly only if the default files are also present in the current directory. These files are not used, however.
To replicate: move the file DE_config.yaml to DE_config.yaml_foo and run `sea-snap DE l --config file_name="DE_config.yaml_foo" -j1
This will exit with an error.
Would DE_config_foo.yaml work? Maybe the file extension is the problem?
Normally, one can change the default yaml file with the sea-snap configuration using the snakemake option
--config file_name"..."
This works correctly only if the default files are also present in the current directory. These files are not used, however.
To replicate: move the file DE_config.yaml to DE_config.yaml_foo and run `sea-snap DE l --config file_name="DE_config.yaml_foo" -j1
This will exit with an error.