issues
search
bihealth
/
seasnap-pipeline
SeA-SnaP: (Se)q (A)nalysis (Sna)kemake (P)ipeline
1
stars
2
forks
source link
Benedikt update
#21
Closed
bobermayer
closed
1 year ago
bobermayer
commented
1 year ago
done here:
remove single-cell parts
allow sample-specific STAR indices
make compatible with recent snakemake version (7.19.1)
remove drmaa, make slurm default choice, use
cubi-dev
profile
still to do:
fix
conda_env.yaml
files
check DE part for consistency
check/add resource requirements in snakefiles
sample-specific indices for bwa / salmon / kallisto?
done here:
cubi-dev
profilestill to do:
conda_env.yaml
files