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SeA-SnaP: (Se)q (A)nalysis (Sna)kemake (P)ipeline
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Benedikt update
#22
Open
bobermayer
opened
1 year ago
bobermayer
commented
1 year ago
done here:
remove single-cell parts
allow sample-specific STAR indices
make compatible with recent snakemake version (7.19.1)
remove drmaa, make slurm default choice, use cubi-dev profile
still to do:
fix conda_env.yaml files
check DE part for consistency
check/add resource requirements in snakefiles
sample-specific indices for bwa / salmon / kallisto?
done here:
still to do: