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bihealth / seasnap-pipeline

SeA-SnaP: (Se)q (A)nalysis (Sna)kemake (P)ipeline
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Slow conda installation #3

Open eudesbarbosa opened 3 years ago

eudesbarbosa commented 3 years ago

Issue Conda env takes forever to install - maybe revisit if all requirements are really necessary.

Proposed solution A good chuck of entries in conda_env.yaml are associated to Bioconductor/R, perhaps specific packages can be installed as they are required for specific templates. Example: https://vbaliga.github.io/verify-that-r-packages-are-installed-and-loaded/

holtgrewe commented 3 years ago

Ensure that you're using mamba. Current Snakemake versions actually use mamba by default now... it's so much faster.