Clean up branches

[eudesbarbosa]

As part of the effort to organize the repository the branches were divided into three categories:

1. Reasonable to merge: Branches that didn't diverge much from master_rc and can be merged with low or moderate effort.
2. Already merged to different branch: Branches that can possibly be deleted as their content is covered by a different branch.
3. Reimplement: Branches I don't dare to save, whatever is in there it would be easier to simply reimplement.

More info: https://github.com/bihealth/seasnap-pipeline/network

Reasonable to merge For each branch: conclude development, catalogue changes and create a new pull request.

• [ ] eric
• [ ] ATACseq
• [ ] hlatyping
• [ ] feature_cellranger_multi

Already merged to different branch For each branch verify that the target branch will be merged into master_rc. If no, work on merging strategies.

• [ ] TE_analysis
• [ ] tmod_dev
• [ ] use_tximeta
• [ ] development

Reimplement For each branch verify if changes are still required. If yes, proceed to find working examples and plan to reimplement the features.

• [ ] fct_ann
• [ ] sc_pipeline
• [ ] circRNA_analysis
• [ ] eric_dev