fix: explicitly require gawk in mutect2/filter wrapper environment

bihealth / snappy-pipeline

SNAPPY Nucleic Acid Processing in Python

MIT License

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fix: explicitly require gawk in mutect2/filter wrapper environment #498

Closed tedil closed 5 months ago

tedil commented 6 months ago

The mutect2/filter wrapper requires the gawk version of match(…), so this PR explicitly requires gawk in the conda environment.

coveralls commented 6 months ago

coverage: 85.742%. remained the same when pulling 179e39e7a11da5972e595829177fcab7101f9560 on fix-mutect-filter-awk into 4b895943f141445a22fdb6de9acf44789fdc097a on main.