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billgreenwald / Pubmed-Batch-Download

Batch download articles based on PMID (Pubmed ID)
MIT License
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Error: #20

Open dryak01 opened 3 years ago

dryak01 commented 3 years ago

Hi,

I'm trying to do a test of the program and am using your test file.

$ python fetch_pdfs.py -pmf example_pmf.tsv -out test1

However I'm getting a connection error - it seems that eutils.ncbi.nlm.nih.gov is no longer available...

Trying to fetch pmid 27547345 ** fetching of reprint 27547345 failed from error HTTPConnectionPool(host='eutils.ncbi.nlm.nih.gov', port=80): Max retries exceeded with url: /entrez/eutils/elink.fcgi?dbfrom=pubmed&id=27547345&retmode=ref&cmd=prlinks (Caused by NewConnectionError('<urllib3.connection.HTTPConnection object at 0x2aaab511fb38>: Failed to establish a new connection: [Errno -2] Name or service not known'))

Thanks.