billgreenwald / pgltools

Paired Genomic Loci Tool Suite
BSD 3-Clause "New" or "Revised" License
30 stars 5 forks source link

No "pgltools" executable #5

Closed niemasd closed 6 years ago

niemasd commented 6 years ago

I installed pgltools as instructed in the README:

pip install PyGLtools

I can import the PyGLtools package within Python like in the example in the README:

import PyGLtools as pygl

However, in the Methods section, there are references to a pgltools executable, e.g.:

pgltools formatbedpe myFile.bedpe > output.pgl
pgltools formatTripSparse [options]
pgltools formatTripSparse -ts myFile.tripSparse -an myFile.annotations > output.pgl
pgltools browser myFile.pgl > output.bed
etc.

However, I get bash: pgltools: command not found when I try to run the pgltools command. How do I get the pgltools executable?

niemasd commented 6 years ago

Woops, didn't read the beginning of the instructions. My bad!